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Refactor services to use centralized system helpers (ServiceControl, PackageManager, run_privileged, is_command_available) instead of ad-hoc subprocess/os calls. Updated deployment, firewall, ftp, nginx, php, python, security, and ssl services to call the new utilities and added error/timeout handling improvements and package manager abstraction. Added backend/app/utils/system.py implementing the helpers and backend/tests/test_utils_system.py with unit tests. This centralizes privileged command execution and service/package management, simplifying tests and platform differences.